宋馳
一、 個(gè)人簡(jiǎn)介
宋馳教授多年來從事藥用植物資源、基因組及生物信息學(xué)研究，共同發(fā)起“千種本草基因組計(jì)劃”并籌建計(jì)劃聯(lián)盟。已成功發(fā)表丹參、菊花、黃連、地黃、紅豆杉、穿心蓮等SCI研究論文三十余篇，包括國(guó)際頂級(jí)學(xué)術(shù)期刊Nature Genetics（2011，2012a，2012b，2012c），Nature Biotechnology（2013），Nature Communicaiton（2014，2017，2021a，2021b），Nature Plants，和 Molecular Plant（2015，2018）等文章，累計(jì)影響因子超過400。
宋馳教授帶領(lǐng)團(tuán)隊(duì)，在全球首次利用第四代高通量測(cè)序技術(shù)——ONT技術(shù)完成了超復(fù)雜基因組——菊花基因組測(cè)序，并以第一作者身份于2018年成功發(fā)表在國(guó)際頂級(jí)植物學(xué)期刊Molecular Plant上（IF=21.949）。首次證明，第四代測(cè)序技術(shù)可以有效應(yīng)用于高雜合、高復(fù)雜基因組測(cè)序，被國(guó)際同行廣泛引用。目前，ONT測(cè)序技術(shù)已經(jīng)成為了“千種本草基因組計(jì)劃”的創(chuàng)新性、引領(lǐng)性技術(shù)，并廣泛適用于藥用植物基因組測(cè)序。
現(xiàn)主要研究方向?yàn)椋核幱梦锓N基因組及資源鑒定研究，基于高通量測(cè)序技術(shù)的大數(shù)據(jù)研究。
郵箱： songchi@cdutcm.edu.cn
二、代表性成果（可含承擔(dān)項(xiàng)目、發(fā)表論文、論著、獲獎(jiǎng)等）
1. Chia JM, Song C, Bradbury PJ, et. al. Maize HapMap2 identifies extant variation from a genome in flux. Nature genetics. 2012, 44(7):803-7.
2. Hufford MB, Xu X, van Heerwaarden J, Pyh?j?rvi T, Chia JM, Cartwright RA, Elshire RJ, Glaubitz JC, Guill KE, Kaeppler SM, Lai J, Morrell PL, Shannon LM, Song C, Springer NM, Swanson-Wagner RA, Tiffin P, Wang J, Zhang G, Doebley J, McMullen MD, Ware D, Buckler ES, Yang S, Ross-Ibarra J. Comparative population genomics of maize domestication and improvement. Nature genetics. 2012, 44(7):808-11.
3. Wang K, Wang Z, Li F, Ye W, Wang J, Song G, Yue Z, Cong L, Shang H, Zhu S, Zou C, Li Q, Yuan Y, Lu C, Wei H, Gou C, Zheng Z, Yin Y, Zhang X, Liu K, Wang B, Song C, Shi N, Kohel RJ, Percy RG, Yu JZ, Zhu YX, Wang J, Yu S. The draft genome of a diploid cotton Gossypium raimondii. Nature genetics. 2012, 44(10):1098-103.
4. Varshney RK, Song C, Saxena RK, Azam S, Yu S, Sharpe AG, Cannon S, Baek J, Rosen BD, Tar'an B, Millan T, Zhang X, Ramsay LD, Iwata A, Wang Y, Nelson W, Farmer AD, Gaur PM, Soderlund C, Penmetsa RV, Xu C, Bharti AK, He W, Winter P, Zhao S, Hane JK, Carrasquilla-Garcia N, Condie JA, Upadhyaya HD, Luo MC, Thudi M, Gowda CL, Singh NP, Lichtenzveig J, Gali KK, Rubio J, Nadarajan N, Dolezel J, Bansal KC, Xu X, Edwards D, Zhang G, Kahl G, Gil J, Singh KB, Datta SK, Jackson SA, Wang J, Cook DR. Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nature Biotechnology. 2013,31(3):240-6.
5. Song C, Liu Y, Song A, Dong G, Zhao H, Sun W, Ramakrishnan S, Wang Y, Wang S, Li T, Niu Y, Jiang J, Dong B, Xia Y, Chen S, Hu Z, Chen F, Chen S. The Chrysanthemum nankingense Genome Provides Insights into the Evolution and Diversification of Chrysanthemum Flowers and Medicinal Traits. Molecular plant. 2018,11(12):1482-1491.
6. Song C, Fu F, Yang L, Niu Y, Tian Z, He X, Yang X, Chen J, Sun W, Wan T, Zhang H, Yang Y, Xiao T, Dossa K, Meng X, Cao F, Van de Peer Y, Wang G, Chen S. Taxus yunnanensis genome offers insights into gymnosperm phylogeny and taxol production. Communications biology. 2021, 4(1):1203.
7. Wan T, Liu Z, Leitch IJ, Xin H, Maggs-K?lling G, Gong Y, Li Z, Marais E, Liao Y, Dai C, Liu F, Wu Q, Song C, Zhou Y, Huang W, Jiang K, Wang Q, Yang Y, Zhong Z, Yang M, Yan X, Hu G, Hou C, Su Y, Feng S, Yang J, Yan J, Chu J, Chen F, Ran J, Wang X, Van de Peer Y, Leitch AR, Wang Q. The Welwitschia genome reveals a unique biology underpinning extreme longevity in deserts. Nature communications. 2021,12(1):4247.
8. Reyes-Chin-Wo S, Wang Z, Yang X, Kozik A, Arikit S, Song C, Xia L, Froenicke L, Lavelle DO, Truco MJ, Xia R, Zhu S, Xu C, Xu H, Xu X, Cox K, Korf I, Meyers BC, Michelmore RW. Genome assembly with in vitro proximity ligation data and whole-genome triplication in lettuce. Nature communications. 2017, 8:14953.
9. Liu Y, Wang S, Li L, Yang T, Dong S, Wei T, Wu S, Liu Y, Gong Y, Feng X, Ma J, Chang G, Huang J, Yang Y, Wang H, Liu M, Xu Y, Liang H, Yu J, Cai Y, Zhang Z, Fan Y, Mu W, Sahu SK, Liu S, Lang X, Yang L, Li N, Habib S, Yang Y, Lindstrom AJ, Liang P, Goffinet B, Zaman S, Wegrzyn JL, Li D, Liu J, Cui J, Sonnenschein EC, Wang X, Ruan J, Xue JY, Shao ZQ, Song C, Fan G, Li Z, Zhang L, Liu J, Liu ZJ, Jiao Y, Wang XQ, Wu H, Wang E, Lisby M, Yang H, Wang J, Liu X, Xu X, Li N, Soltis PS, Van de Peer Y, Soltis DE, Gong X, Liu H, Zhang S. The Cycas genome and the early evolution of seed plants. Nature plants. 2022, 8(4):389-401.
10. Liu Y, Wang B, Shu S, Li Z, Song C, Liu D, Niu Y, Liu J, Zhang J, Liu H, Hu Z, Huang B, Liu X, Liu W, Jiang L, Alami MM, Zhou Y, Ma Y, He X, Yang Y, Zhang T, Hu H, Barker MS, Chen S, Wang X, Nie J. Analysis of the Coptis chinensis genome reveals the diversification of protoberberine-type alkaloids. Nature communications. 2021, 12(1):3276.
11. Su X, Yang L, Wang D, Shu Z, Yang Y, Chen S, Song C. 1 K Medicinal Plant Genome Database: an integrated database combining genomes and metabolites of medicinal plants. Horticulture research. 2022, 9:uhac075.